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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3919159_3925286_R

Intron Information:

Intron Rank:
133499
Intron Class:
major
Intron Phase:
Intron Coordinates:
3919159 - 3925286
Intron Length:
6128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTGT
U12 Branch Point Sequence:
CTCTCCTTTTCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
36.2
-0.8
4.3
65.7
43.2
Major PPT
86.2
0.81
0.7
83.9
24.1
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
43.8
-0.4
3.6
66.88
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019084
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043705
3912739 - 3943652
30914