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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_395422_404768_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
395422 - 404768
Intron Length:
9347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTCA
5'SS Class:
strong_major
3'SS Sequence:
GATCTGTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
AATTCAGTAAAC
Flanking Amino Acid:
GWRIPVTSNKRPTRDSEDEE
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.3
36.5
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
76.1
0.59
1
68.4
41.9
Minor 5ss
50.9
0.03
2.3
65.5
45.7
Minor BPS
47.8
-0.1
2.3
64.95
39.8

Associated Gene:

Gene:
TMEM132B
Ensembl Gene ID:
ENSAPLG00000011379
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021986
139111 - 408967
269857
ENSAPLT00000019881
201355 - 408967
207613
ENSAPLT00000011847
139111 - 408967
269857