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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3957016_3957901_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3957016 - 3957901
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGCATC
5'SS Class:
major
3'SS Sequence:
CTTTCACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCTTTCTGACT
Flanking Amino Acid:
LSLPMQETELCSVESSLPLE
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
69.1
41.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
83.7
0.76
0.8
77
30.6
Minor 5ss
45.9
-0.4
2.9
62
42.6
Minor BPS
59.4
0.38
1.6
78.91
37.7

Associated Gene:

Gene:
GOLGA3
Ensembl Gene ID:
ENSAPLG00000003277
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003366
3953115 - 3976291
23177