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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3959219_3960188_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3959219 - 3960188
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TATCTGTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACTCTTTTATCT
Flanking Amino Acid:
VRSRRDSISSSVSMESSIAG
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.9
0.65
0.9
69.8
41.2
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
56.2
0.27
1.6
70.88
40.5

Associated Gene:

Gene:
GOLGA3
Ensembl Gene ID:
ENSAPLG00000003277
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003366
3953115 - 3976291
23177