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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3961934_3962831_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3961934 - 3962831
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATGA
5'SS Class:
major
3'SS Sequence:
CTCCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGGTATTAATC
Flanking Amino Acid:
RLQSEMANIQAGQMTQAGVL
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
63.2
37.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81
0.7
0.7
72.4
32.3
Minor 5ss
43.5
-0.7
2.8
57
47.1
Minor BPS
56.4
0.18
1.7
66.54
39.7

Associated Gene:

Gene:
GOLGA3
Ensembl Gene ID:
ENSAPLG00000003277
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003366
3953115 - 3976291
23177