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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3964042_3964321_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3964042 - 3964321
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACTGT
5'SS Class:
major
3'SS Sequence:
CGCATTTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAATCTTAAAA
Flanking Amino Acid:
AATLEQELDQVKLTLHQRDL
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
63
44.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.7
0.56
0.9
71.9
37.9
Minor 5ss
43.5
-0.7
3.3
64.5
46.9
Minor BPS
67.7
0.55
1.4
74.32
36.5

Associated Gene:

Gene:
GOLGA3
Ensembl Gene ID:
ENSAPLG00000003277
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003366
3953115 - 3976291
23177