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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3966696_3967230_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3966696 - 3967230
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TCCCTTTTAAAG
Flanking Amino Acid:
ERDDMEARLQSLQFDKEQMA
Intron Amino Acid Position:
950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
72.8
0.51
1
73.3
29.1
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
51.9
-0
1.5
52.95
42.3

Associated Gene:

Gene:
GOLGA3
Ensembl Gene ID:
ENSAPLG00000003277
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003366
3953115 - 3976291
23177