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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3969127_3969747_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3969127 - 3969747
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGGCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTACTTTCAACT
Flanking Amino Acid:
REKVLELEDELQESRGFRRK
Intron Amino Acid Position:
1102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
76.8
31.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
75.3
0.57
0.9
68.2
37.6
Minor 5ss
31.6
-2.1
2.6
38
39.5
Minor BPS
62.1
0.46
1.5
78.31
37.7

Associated Gene:

Gene:
GOLGA3
Ensembl Gene ID:
ENSAPLG00000003277
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003366
3953115 - 3976291
23177