About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3970628_3971142_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3970628 - 3971142
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTTGTTTTATCA
Flanking Amino Acid:
KSKVKDLKEQVAAAKADAAH
Intron Amino Acid Position:
1207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
40.9
Major BPS
78.3
0.7
1
80
32.1
Major PPT
92.1
0.95
0.5
89.1
19.9
Minor 5ss
31
-2.2
3.6
47.4
48
Minor BPS
61.3
0.35
1.7
74.08
38.4

Associated Gene:

Gene:
GOLGA3
Ensembl Gene ID:
ENSAPLG00000003277
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003366
3953115 - 3976291
23177