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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3972535_3972936_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3972535 - 3972936
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTATCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
ATTCCCTTATTT
Flanking Amino Acid:
ELEGMQVVLQNIKTELEMVR
Intron Amino Acid Position:
1339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
80.9
0.69
0.8
74.6
35.3
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
69.5
0.69
1.5
84.07
36.6

Associated Gene:

Gene:
GOLGA3
Ensembl Gene ID:
ENSAPLG00000003277
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003366
3953115 - 3976291
23177