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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3973102_3974060_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3973102 - 3974060
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGAG
5'SS Class:
major
3'SS Sequence:
TTCCCTTAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCCTTAACC
Flanking Amino Acid:
LDLKHGKMKKRKGENNSSNP
Intron Amino Acid Position:
1394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.5
40.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72
0.5
0.9
66.5
38.5
Minor 5ss
34.7
-1.7
3.5
46
49.3
Minor BPS
89.2
1.21
0.9
92.56
25.2

Associated Gene:

Gene:
GOLGA3
Ensembl Gene ID:
ENSAPLG00000003277
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003366
3953115 - 3976291
23177