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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3991310_3992704_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3991310 - 3992704
Intron Length:
1395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTATATTCATT
Flanking Amino Acid:
GSGDNPTVVQEGCRYNVMHV
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
50.3
0.09
2
77.29
39.4

Associated Gene:

Gene:
ANKLE2
Ensembl Gene ID:
ENSAPLG00000003408
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003492
3987359 - 4001189
13831