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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3993313_3993705_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3993313 - 3993705
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTATATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTTATTAATA
Flanking Amino Acid:
RNKYDQTPAEVVCERSKNKS
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.6
0.51
1
67.1
42.3
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
68.4
0.57
1.5
76.99
33.5

Associated Gene:

Gene:
ANKLE2
Ensembl Gene ID:
ENSAPLG00000003408
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003492
3987359 - 4001189
13831