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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3993773_3994473_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3993773 - 3994473
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTATT
5'SS Class:
major
3'SS Sequence:
TATTGTATTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTATTGTATT
Flanking Amino Acid:
LKEKLREYLKGRYYVPLLRA
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.3
83.5
35.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
59.4
0.21
1.7
70.6
44.1
Minor 5ss
43.2
-0.7
2.6
60.2
44.3
Minor BPS
47.9
-0
1.9
70.86
40.3

Associated Gene:

Gene:
ANKLE2
Ensembl Gene ID:
ENSAPLG00000003408
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003492
3987359 - 4001189
13831