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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3994656_3996273_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3994656 - 3996273
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAG
Flanking Amino Acid:
AFAGPMSPSKAEEFRRLWKT
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.5
0.75
0.9
85.6
26.4
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
65.7
0.35
1.5
67.62
40.4

Associated Gene:

Gene:
ANKLE2
Ensembl Gene ID:
ENSAPLG00000003408
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003492
3987359 - 4001189
13831