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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3996381_3997272_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3996381 - 3997272
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTAAT
5'SS Class:
major
3'SS Sequence:
TTATTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
DLERGVERVGRELAHELGFP
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
79.7
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.5
0.82
0.8
81.9
34.1
Minor 5ss
49
-0.1
2.3
68.3
42.6
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
ANKLE2
Ensembl Gene ID:
ENSAPLG00000003408
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003492
3987359 - 4001189
13831