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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3999803_4000176_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3999803 - 4000176
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCTG
5'SS Class:
major
3'SS Sequence:
GTCTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTAACGAAAT
Flanking Amino Acid:
VQSYSSSDRQSWPSPALKGR
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
58.9
45.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85
0.79
0.8
76.9
37.4
Minor 5ss
40.5
-1.1
3.3
55.9
48.3
Minor BPS
42.4
-0.5
2.1
65.76
43.6

Associated Gene:

Gene:
ANKLE2
Ensembl Gene ID:
ENSAPLG00000003408
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003492
3987359 - 4001189
13831