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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4005586_4007498_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4005586 - 4007498
Intron Length:
1913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
TTTGTCTTAATA
Flanking Amino Acid:
HANVIRYIVCRALQFPPEGW
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
77.2
0.61
0.9
74.1
35.4
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
77
0.84
1.2
82.43
32.9

Associated Gene:

Gene:
PGAM5
Ensembl Gene ID:
ENSAPLG00000003722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003807
4005435 - 4013075
7641