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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4008031_4009131_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4008031 - 4009131
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTAATATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTGTATTTAATA
Flanking Amino Acid:
TTEIISKYLPGVKKISTDLL
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.7
0.71
0.9
78.4
39.4
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
63.5
0.42
1.5
68.79
37.9

Associated Gene:

Gene:
PGAM5
Ensembl Gene ID:
ENSAPLG00000003722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003807
4005435 - 4013075
7641