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Intron Name: Anas_platyrhynchos_platyrhynchos_16_4009866_4013036_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4009866 - 4013036

Intron Length:

3171

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGCGGC

5'SS Class:

major

3'SS Sequence:

TGTGTGTGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GATGTTTTAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

58.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

68.2

0.41

1.1

65.8

45.3

Minor 5ss

29.8

-2.3

3.5

40.6

Minor BPS

0.33

1.5

70.55

40.3

Associated Gene:

Gene:

PGAM5

Ensembl Gene ID:

ENSAPLG00000003722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003807

4005435 - 4013075

7641