Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4024580_4026585_F

Intron Information:

Intron Rank:

145228

Intron Class:

major

Intron Phase:

Intron Coordinates:

4024580 - 4026585

Intron Length:

2006

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTGCAC

U12 Branch Point Sequence:

CTCTCTTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.9

1.06

0.6

14.8

Major BPS

46.1

-0.2

1.4

54.6

40.8

Major PPT

87.9

0.85

0.7

82.7

25.9

Minor 5ss

40.7

-1

57.8

46.8

Minor BPS

63.9

0.43

1.7

70.65

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028310

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025083

4024458 - 4030894

6437