About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4033428_4035752_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4033428 - 4035752
Intron Length:
2325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTTTTGATG
Flanking Amino Acid:
ITEVQSVGAQRDDMQLKTPH
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.6
33
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.1
0.7
0.9
77
36.2
Minor 5ss
37.3
-1.4
3
52.4
44.2
Minor BPS
62.4
0.24
1.3
66.85
35.2

Associated Gene:

Gene:
ZDHHC8
Ensembl Gene ID:
ENSAPLG00000003758
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003883
4033227 - 4141192
107966
ENSAPLT00000019084
4033227 - 4141192
107966