About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4041263_4041591_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4041263 - 4041591
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
AACAATTAATCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTACTTTAATG
Flanking Amino Acid:
PPQGSCFMLTRYIVEPKKKQ
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
55.6
0.13
1.1
52.5
45
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
75
0.65
1.3
75.87
36.2

Associated Gene:

Gene:
ZDHHC8
Ensembl Gene ID:
ENSAPLG00000003758
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003883
4033227 - 4141192
107966