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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4041634_4042951_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4041634 - 4042951
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCCATGTTAATT
Flanking Amino Acid:
EHVLCSPLAPSLHLPPQGSC
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.9
0.63
0.8
69.7
36.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
49.6
0.05
2.1
67.3
44.4

Associated Gene:

Gene:
ZDHHC8
Ensembl Gene ID:
ENSAPLG00000003758
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003883
4033227 - 4141192
107966