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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_405043_406340_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
405043 - 406340
Intron Length:
1298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCCT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCTCTTTCAAG
Flanking Amino Acid:
GREHGITTVQVLSPLSDSIL
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.5
44
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.3
0.68
1
79.3
33
Minor 5ss
31.7
-2.1
3.6
48.5
47.2
Minor BPS
54
-0
2
63.96
44.2

Associated Gene:

Gene:
TMEM132B
Ensembl Gene ID:
ENSAPLG00000011379
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021986
139111 - 408967
269857
ENSAPLT00000019881
201355 - 408967
207613
ENSAPLT00000011847
139111 - 408967
269857