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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_406533_407815_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
406533 - 407815
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTC
Flanking Amino Acid:
AYDILHTPKQEAIVSAWILF
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.3
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.7
80.3
25.2
Minor 5ss
45.3
-0.5
2.7
60.2
44.5
Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:
TMEM132B
Ensembl Gene ID:
ENSAPLG00000011379
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021986
139111 - 408967
269857
ENSAPLT00000019881
201355 - 408967
207613
ENSAPLT00000011847
139111 - 408967
269857