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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4151263_4152213_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4151263 - 4152213
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTGATCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTGATC
Flanking Amino Acid:
RNEVDKRAKKAGTDKNDSAD
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
70
0.45
0.9
66.9
39.6
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
65.5
0.47
1.6
74.7
36.3

Associated Gene:

Gene:
RANBP1
Ensembl Gene ID:
ENSAPLG00000003954
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004056
4151138 - 4157888
6751