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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4154446_4156107_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4154446 - 4156107
Intron Length:
1662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTTAT
5'SS Class:
weak_major
3'SS Sequence:
GCTTGCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACCACTTTAATG
Flanking Amino Acid:
KTLKICANHYITPLMELKPN
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
70.7
35.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
80.6
0.69
0.9
76.7
37.4
Minor 5ss
50.6
0.02
2.5
71.8
39.2
Minor BPS
57.4
0.09
1.4
53.71
42.1

Associated Gene:

Gene:
RANBP1
Ensembl Gene ID:
ENSAPLG00000003954
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004056
4151138 - 4157888
6751