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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4156266_4157736_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4156266 - 4157736
Intron Length:
1471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AACTTCTGAAAT
Flanking Amino Acid:
LEEDEEELFKMRAKLFRFAS
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.4
0.64
1
82.9
26.1
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
56.6
0.29
1.5
69.67
40.7

Associated Gene:

Gene:
RANBP1
Ensembl Gene ID:
ENSAPLG00000003954
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004056
4151138 - 4157888
6751