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Intron Name: Anas_platyrhynchos_platyrhynchos_16_4161643_4162533_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4161643 - 4162533

Intron Length:

891

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCATA

5'SS Class:

strong_major

3'SS Sequence:

CTGAAAATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TGTTAAGTAACT

Flanking Amino Acid:

KVVKAFQDYIRSTPYSVYSP

Intron Amino Acid Position:

308

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

83.2

30.8

Major BPS

82.1

0.8

71.6

36.4

Major PPT

64.4

0.32

1.1

55.6

43.2

Minor 5ss

37.5

-1.4

48.1

47.6

Minor BPS

49.6

0.05

2.4

79.32

42.1

Associated Gene:

Gene:

TRMT2A

Ensembl Gene ID:

ENSAPLG00000004108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028501

4159504 - 4167293

7790

ENSAPLT00000004235

4159504 - 4167293

7790