Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4162649_4162927_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4162649 - 4162927

Intron Length:

279

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTTAAG

5'SS Class:

major

3'SS Sequence:

ATGAAACCTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

CTCTTTTCAAAT

Flanking Amino Acid:

IMAIVYFNPQKLSKEELADL

Intron Amino Acid Position:

347

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

72.5

38.4

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

0.29

56.6

43.8

Minor 5ss

41.2

-1

2.5

50.7

45.8

Minor BPS

52.3

0.15

1.7

68.37

Associated Gene:

Gene:

TRMT2A

Ensembl Gene ID:

ENSAPLG00000004108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028501

4159504 - 4167293

7790

ENSAPLT00000004235

4159504 - 4167293

7790