Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4163722_4164770_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4163722 - 4164770

Intron Length:

1049

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGGCTG

5'SS Class:

major

3'SS Sequence:

TATATTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAA

U12 Branch Point Sequence:

TATATTTTCACA

Flanking Amino Acid:

FRISPHAFFQVNTQAAEVLY

Intron Amino Acid Position:

423

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

67.1

Major BPS

78.6

0.71

78.6

Major PPT

81.5

0.71

0.9

76.2

37.4

Minor 5ss

36.1

-1.6

3.5

47.8

42.2

Minor BPS

55.1

0.15

1.8

68.51

Associated Gene:

Gene:

TRMT2A

Ensembl Gene ID:

ENSAPLG00000004108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004235

4159504 - 4167293

7790