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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4164894_4165518_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4164894 - 4165518
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGATTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
TTTCCCTTGATT
Flanking Amino Acid:
TGTIGISLAKKVKKVIGIEL
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.4
28.6
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
75.5
0.57
0.9
69.9
36.3
Minor 5ss
30.6
-2.2
2.6
36.3
40.7
Minor BPS
81.9
1.08
1
92.92
28.4

Associated Gene:

Gene:
TRMT2A
Ensembl Gene ID:
ENSAPLG00000004108
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004235
4159504 - 4167293
7790