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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4173239_4173450_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4173239 - 4173450
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
ATTACATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATGATT
Flanking Amino Acid:
TCGKHTVRGWCKNKRVGKQL
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
100
1.24
0.5
100
0
Major PPT
77.5
0.62
0.9
69.8
39.9
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
63.5
0.51
1.6
81.74
33.2

Associated Gene:

Gene:
DGCR8
Ensembl Gene ID:
ENSAPLG00000004281
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004423
4172021 - 4189569
17549