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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4175340_4176548_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4175340 - 4176548
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATATAC
5'SS Class:
major
3'SS Sequence:
TCATTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
GAGACATTAAAT
Flanking Amino Acid:
SSKKLAKNKAARATLEILIP
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
66.7
33
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
85.3
0.8
0.8
80.8
30.9
Minor 5ss
38.4
-1.3
3.1
47.6
42.5
Minor BPS
50.9
0.11
1.8
66
43.4

Associated Gene:

Gene:
DGCR8
Ensembl Gene ID:
ENSAPLG00000004281
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004423
4172021 - 4189569
17549