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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4176648_4177528_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4176648 - 4177528
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCATCCTTCATT
Flanking Amino Acid:
VRPVYNFFECENPSEPFGAS
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.6
0.76
0.8
80.7
30.1
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
67.5
0.63
1.7
80.42
41.9

Associated Gene:

Gene:
DGCR8
Ensembl Gene ID:
ENSAPLG00000004281
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004423
4172021 - 4189569
17549