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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4177631_4178558_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4177631 - 4178558
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGAAACTAATTG
Flanking Amino Acid:
LSVQDAPTKKEFVINPNGKS
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1.1
81.4
27.6
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
87.1
0.83
0.6
83.9
24.2
Minor 5ss
35.9
-1.6
2.6
41.2
45.2
Minor BPS
40.5
-0.8
2
42.8
42.2

Associated Gene:

Gene:
DGCR8
Ensembl Gene ID:
ENSAPLG00000004281
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004423
4172021 - 4189569
17549