Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4178757_4180374_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4178757 - 4180374

Intron Length:

1618

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGTATG

5'SS Class:

strong_major

3'SS Sequence:

ATGTGTTTCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAG

U12 Branch Point Sequence:

TTGAGAGTAACT

Flanking Amino Acid:

KVEVCKDESVDLEDFRHYLE

Intron Amino Acid Position:

438

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

35.1

Major BPS

64.6

0.36

1.5

63.4

44.3

Major PPT

71.9

0.49

0.9

69.9

40.9

Minor 5ss

45.4

-0.5

2.5

59.2

45.4

Minor BPS

-0.3

2.5

69.67

46.8

Associated Gene:

Gene:

DGCR8

Ensembl Gene ID:

ENSAPLG00000004281

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004423

4172021 - 4189569

17549