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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4180658_4181375_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4180658 - 4181375
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTACATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTTATTTTACA
Flanking Amino Acid:
PYFLGTGSIRKHDPPLSSIP
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
78.1
36.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.7
0.76
0.8
77.7
35.4
Minor 5ss
35.7
-1.6
3
42.9
43.6
Minor BPS
59.2
0.28
1.8
73.14
38.1

Associated Gene:

Gene:
DGCR8
Ensembl Gene ID:
ENSAPLG00000004281
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004423
4172021 - 4189569
17549