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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4181519_4182986_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4181519 - 4182986
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTGCTTTAAAG
Flanking Amino Acid:
MMTKIKTVLKSRGRPPTEPL
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
74.5
0.55
1
74.4
34.3
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
67.8
0.42
1.6
72.3
40.7

Associated Gene:

Gene:
DGCR8
Ensembl Gene ID:
ENSAPLG00000004281
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004423
4172021 - 4189569
17549