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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4183150_4183589_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4183150 - 4183589
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACATTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TATCTGATGACA
Flanking Amino Acid:
DEETLNYSYEDDFDNDVDAL
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
80.6
0.69
0.9
77.6
35.9
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
44.9
-0.4
2.2
61.41
38.2

Associated Gene:

Gene:
DGCR8
Ensembl Gene ID:
ENSAPLG00000004281
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004423
4172021 - 4189569
17549