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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4184600_4189337_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4184600 - 4189337
Intron Length:
4738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTTTTTGTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
88.6
0.87
0.6
85.2
22.3
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
60.6
0.33
2
75.16
36.6

Associated Gene:

Gene:
DGCR8
Ensembl Gene ID:
ENSAPLG00000004281
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004423
4172021 - 4189569
17549