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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4197185_4197618_R

Intron Information:

Intron Rank:
144804
Intron Class:
major
Intron Phase:
Intron Coordinates:
4197185 - 4197618
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
AACCCTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTGTTCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73
0.52
0.9
65
35.4
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
53.7
0.09
1.8
67.01
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025284
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027586
4195722 - 4198499
2778
ENSAPLT00000025778
4196183 - 4197679
1497