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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4197680_4198151_R

Intron Information:

Intron Rank:
144800
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
4197680 - 4198151
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
ACAACATGTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCACAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
53.9
0.09
1
43.9
41.7
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
57.5
0.23
1.8
73.44
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025284
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027586
4195722 - 4198499
2778
ENSAPLT00000017239
4195722 - 4204350
8629