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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4204396_4207299_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4204396 - 4207299
Intron Length:
2904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAACAACT
5'SS Class:
weak_major
3'SS Sequence:
CTTCATGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTGACTGTGACT
Flanking Amino Acid:
ETSTYEFELHTATSDHRD*
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.4
69
41.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
78.7
0.65
0.9
72.5
37.3
Minor 5ss
43
-0.8
2.9
58.8
38.6
Minor BPS
52.2
0.15
2.1
75.33
42

Associated Gene:

Gene:
TANGO2
Ensembl Gene ID:
ENSAPLG00000003711
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048233
4204371 - 4217013
12643