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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4207417_4209492_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4207417 - 4209492
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TAAGGCTTAACC
Flanking Amino Acid:
VCVRCPGYGTRTNTVVLIDS
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
86.6
0.82
0.9
84.6
36
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
59.5
0.28
1.9
68.4
42.9

Associated Gene:

Gene:
TANGO2
Ensembl Gene ID:
ENSAPLG00000003711
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048233
4204371 - 4217013
12643
ENSAPLT00000027397
4207236 - 4217013
9778
ENSAPLT00000003824
4207236 - 4230142
22907