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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4213557_4215128_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4213557 - 4215128
Intron Length:
1572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GGTTTTTCAAGG
Flanking Amino Acid:
NGFNLIAADFNTTKGDVICY
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
47.3
-0.3
1.9
52.44
42.4

Associated Gene:

Gene:
TANGO2
Ensembl Gene ID:
ENSAPLG00000003711
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048233
4204371 - 4217013
12643
ENSAPLT00000027397
4207236 - 4217013
9778
ENSAPLT00000003824
4207236 - 4230142
22907