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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4215244_4216227_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4215244 - 4216227
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAGG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GTTTACATATTA
Flanking Amino Acid:
PKTDKNAKGRGALVTNFLTS
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
68.1
42.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.3
0.64
0.7
77.2
30.8
Minor 5ss
39
-1.2
2.8
49
46.8
Minor BPS
48.5
-0.1
2
66.37
39.8

Associated Gene:

Gene:
TANGO2
Ensembl Gene ID:
ENSAPLG00000003711
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048233
4204371 - 4217013
12643
ENSAPLT00000027397
4207236 - 4217013
9778
ENSAPLT00000003824
4207236 - 4230142
22907