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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_422122_444745_R

Intron Information:

Intron Rank:
154709
Intron Class:
major
Intron Phase:
Intron Coordinates:
422122 - 444745
Intron Length:
22624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGATCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTTTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76
0.59
0.9
70
40.1
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
63.2
0.4
1.3
72.05
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030817
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025387
421926 - 445146
23221