Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_422122_461435_R

Intron Information:

Intron Rank:

154711

Intron Class:

major

Intron Phase:

Intron Coordinates:

422122 - 461435

Intron Length:

39314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTGATCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTGTTTTGATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

89.8

22.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

0.59

0.9

40.1

Minor 5ss

39.1

-1.2

2.8

51.7

39.1

Minor BPS

63.2

0.4

1.3

72.05

33.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030817

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047608

421804 - 471074

49271